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2017

 

Priyanka Banerjee, Abhijit Chakraborty, Rajiv Kumar Mondal, mousumikhatun, Somenath Datta, Kausik Das, Pratap Pandit, SOUVIK MUKHERJEE, Soma Banerjee, Saurabh Ghosh, Saikat Chakrabarti, Abhijit Chowdhury &Simanti Datta. HBV quasispecies composition in Lamivudinefailed chronic hepatitis B patients and its influence on virological response to Tenofovir-based rescue therapy. Scientific Reports. 2017, 7, 44742; doi: 10.1038/srep44742

Das Ghosh, D., Mukhopadhyay, I., Bhattacharya, A., Roy Chowdhury, R., Mandal, N.R., Roy, S., and SENGUPTA, S. Impact of genetic variations and transcriptional alterations of HLA class I genes on cervical cancer pathogenesis. International Journal of Cancer, 2017, DOI: 10.1002/ijc.30681

Saha Sharma, S., Roy Chowdhury, R., Mandal, N.R., Roy, S.,and SENGUPTA, S. Expression signatures of HOX cluster genes in cervical cancer pathogenesis: Impact of human papillomavirus type 16 oncoprotein E7. Oncotarget, 2017. DOI: 10.18632/oncotarget.16619

Sen S., Mandal P., Bhattacharya A., R., Mondal, N.R., Chakravarty, B., Chatterjee, T., Roy, S., and SENGUPTA, S. Impact of viral and host DNA methylations on HPV16-related cervical cancer pathogenesis.. Tumor Biology, 2017, DOI: 10.1177/1010428317699799,

Banerjee A, Shukla S, Pandey AD, Goswami S, Bandyopadhyay B, Ramachandran V, Das S, Malhotra A, Agarwal A, Adhikari S, Rahman M, Chatterjee S, Bhattacharya N, Basu N, PANDEY P, Sood V, Vrati S. RNA-Seq analysis of peripheral blood mononuclear cells reveals unique transcriptional signatures associated with disease progression in dengue patients. Translational Research, 2017, doi: 10.1016/j.trsl.2017.06.007.

Xu S, Brockmöller T, Navarro-Quezada A, Kuhl H, Gase K, Ling Z, Zhou W,Kreitzer C, Stanke M, Tang H, Lyons E, PANDEY P, Pandey SP, Timmermann B,Gaquerel E, Baldwin IT. Wild tobacco genomes reveal the evolution of nicotine biosynthesis. Proc. Natl. Acad. Sci. U S A. 2017, 114(23): doi:10.1073/pnas.1700073114.

Ray R, PANDEY P. Surveying computational algorithms for identification of mirna–mrna regulatory modules. Nucleus, 2017, Volume 60(2):. Doi:10.1007/s13237-017-0208-5, 165-174. 25. Biswas, A. and Desai, K.V. The LncRNA HOTAIR-expression, regulation and function in cancer Nucleus (2017) 60: 155

Chatterjee S, Verma SP, PANDEY P. Profiling conserved biological pathways in Autosomal Dominant Polycystic Kidney Disorder (ADPKD) to elucidate key transcriptomic alterations regulating cystogenesis: A cross-species meta-analysis approach. S0378-1119(17) 30510-3.

Choudhury R and MOHAPATRA SK. Generic transcriptional response of E. Coli to stress. In: “Antimicrobial Research: Novel bioknowledge and educational programs”. Published by Formatex Research Centre. 2017.

Jamwal M, Aggarwal A, Das A, MAITRA A, Sharma P, Krishnan S, Arora N, Bansal, D, Das R. Next-generation sequencing unravels homozygous mutation in glucose-6-phosphate isomerase, gpic.1040G>A (p.Arg347His) causing hemolysis in an Indian infant. Clin Chim Acta. 2017, 461:81-84.

Jamwal M, Aggarwal A, Maitra A, Sharma P, Bansal D, Trehan A, Thapa BR, Malhotra P, Das R. First report of Mediterranean stomatocytosis/macrothrombocytopenia in an Indian family: a diagnostic dilemma. Pathology. 2017 Dec;49(7):811-815. doi: 10.1016/j.pathol.2017.06.010. Epub 2017 Oct 26. PubMed PMID: 29102041.

Giri AK, Bharadwaj S, Banerjee P, Chakraborty S, Parekatt V, Rajashekar D, Tomar A, Ravindran A, BASU A, Tandon N, Bharadwaj D. DNA methylation profiling reveals the presence of population-specific signatures correlating with phenotypic characteristics. Molecular Genetics and Genomics. 2017, 292(3)-655-662.

Khongsti S, Lamare FA, Shunyu NB, Ghosh S, Maitra A, Ghosh S. Whole genome DNA methylation profiling of oral cancer in ethnic population of Meghalaya, North East India reveals novel genes. Genomics. 2018 Mar;110(2):112-123. doi: 10.1016/j.ygeno.2017.09.002. Epub 2017 Sep 7. PubMed PMID: 28890207.

Singh R, De Sarkar N, Sarkar S, Roy R, Chattopadhyay E, Ray A, Biswas NK, Maitra A, Roy B. Analysis of the whole transcriptome from gingivo-buccal squamous cell carcinoma reveals deregulated immune landscape and suggests targets for immunotherapy. PLoS One. 2017 Sep 8;12(9):e0183606. doi: 10.1371/journal.pone.0183606. eCollection 2017. PubMed PMID: 28886030; PubMed Central PMCID: PMC5590820.

Mondal M, Bergstrom A, Xue Y, Calafell F, Laayouni H, Casals F, MAJUMDER PP, Tyler-Smith C, Bertranpetit J . Y-Chromosomal sequences of diverse Indian populations and the ancestry of the Andamanese. Hum Genet. 2017, 136:499-510.

ANKITA GARG, Trout R, Spector SA. Human Immunodeficiency Virus Type-1 Myeloid Derived Suppressor Cells Inhibit Cytomegalovirus Inflammation through Interleukin-27 and B7-H4. Scientific Reports. 2017, 44485.

ANKITA GARG, PARTHA P MAJUMDER. Expert Corner: HIV-1 AND THE HOST: A Tale of Two Genomes. 2017, 36-39.

Sengupta D, Guha U, BHATTACHARJEE S, Sengupta M: Association of 12 polymorphic variants conferring genetic risk to lung cancer in Indian population: An extensive meta-analysis. Environ Mol Mutagen. 2017 Dec;58(9):688-700. Doi: 10.1002/em.22149. Epub 2017 Oct 27.

CHINNASWAMY S, Wardzynska A, Pawelczyk M, Makowska J, Skaaby T, Mercader JM, Ahluwalia TS, Grarup N, Guindo-Martinez M, Bisgaard H, Torrents D, Linneberg A, Bønnelykke K, Kowalski ML. 2017. A functional IFN-λ4-generating DNA polymorphism could protect older 154 asthmatic women from aeroallergen sensitization and associate with clinical features of asthma. Scientific Reports (doi:10.1038/s41598-017-10467-y).

Bhushan A, Ghosh S, BHATTACHARJEE S and CHINNASWAMY S. 2017. Confounding by single nucleotide polymorphism rs117648444 (P70S) affects the association of interferon lambda locus variants with response to interferon-α-ribavirin therapy in patients with chronic genotype 3 hepatitis C virus infection. Journal of Interferon and Cytokine Research, 37(8): 369 - 382.

Mukhopadhyay S, Thatoi PK, Pandey AD, Das BK, Ravindran B, Bhattacharjee S , MOHAPATRA SK. Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock. Plos One. 2017 Feb 15;12(2):e0171689. PMID: 28199355.

Chatterjee S and MAJUMDER PP. Kalyani cohort – the first platform in Eastern India for longitudinal studies on health and disease parameters in peri-urban setting. Global Health, Epidemiology and Genomics (2017), 2, e2, page 1 of 11. Doi:10.1017/gheg.2016.19